GgaEX0002868 @ galGal4
Exon Skipping
Gene
ENSGALG00000002294 | SEMA6A
Description
Semaphorin-6A isoform4 [Source:UniProtKB/TrEMBL;Acc:E1C1C2]
Coordinates
chrZ:72454578-72460947:+
Coord C1 exon
chrZ:72454578-72454795
Coord A exon
chrZ:72457948-72458079
Coord C2 exon
chrZ:72460792-72460947
Length
132 bp
Sequences
Splice sites
3' ss Seq
TGGGAAATATCACTTTGCAGCAT
3' ss Score
4.28
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
GTAGTTTTCCCGAGGGTGGCTCAGGTTTGCAAAAATGATATGGGAGGATCTCAGAGAGTGCTGGAAAAACAGTGGACTTCCTTCCTCAAGGCTCGTTTGAACTGCTCAGTTCCTGGCGATTCACACTTCTACTTCAACATACTGCAGGCAGTTACAGATGTTATCCATTTCAATGGCCGGGATGTTGTTTTAGCAACCTTCTCCACTCCATATAACAG
Seq A exon
CATCCCTGGCTCTGCAGTCTGTGCCTATGACATGCTTGACATTGCCAGTGTATTCACTGGGAGATTCAAAGAACAAAAGTCTCCAGACTCCACATGGACACCGGTTCCTGATGAAAGAGTTCCCAAACCCAG
Seq C2 exon
GCCTGGTTGTTGTGCTGGCTCTACATCATTAGAAAAATACGCAACCTCTAGTGAGTTCCCAGATGATACTCTGAACTTCATCAAAACACACCCACTGATGGATGAGGCTGTACCTTCCATTGTCAATCGACCCTGGTTCCTGAGAACGATGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002294_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.333 C2=0.047
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(16.7=100)
A:
PF0140314=Sema=FE(10.2=100)
C2:
PF0140314=Sema=FE(12.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTCCTGGCGATTCACACT
R:
TCAGGAACCAGGGTCGATTGA
Band lengths:
255-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]