RnoEX0079381 @ rn6
Exon Skipping
Gene
ENSRNOG00000004033 | Sema6a
Description
semaphorin 6A [Source:RGD Symbol;Acc:1305493]
Coordinates
chr18:41368217-41373521:-
Coord C1 exon
chr18:41373304-41373521
Coord A exon
chr18:41370980-41371111
Coord C2 exon
chr18:41368217-41368372
Length
132 bp
Sequences
Splice sites
3' ss Seq
GTATGAAATGTCCTTTCCAGCAT
3' ss Score
5.86
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
GTTGTATTCCCCAGGGTGGCTCAGGTTTGTAAGAACGACATGGGAGGGTCTCAGAGAGTCCTGGAGAAGCAGTGGACATCATTCCTGAAGGCTCGCCTGAACTGCTCCGTGCCTGGAGACTCTCATTTTTATTTCAATATACTCCAGGCAGTTACAGATGTGATTCGAATTAATGGCCGTGATGTTGTCTTGGCAACCTTTTCCACACCTTATAACAG
Seq A exon
CATCCCTGGTTCTGCAGTCTGTGCCTATGACATGCTTGACATTGCCAATGTTTTTACTGGGAGATTCAAGGAACAGAAATCACCTGATTCTACCTGGACACCGGTTCCAGATGAGCGAGTCCCTAAGCCCAG
Seq C2 exon
GCCAGGCTGTTGTGCTGGATCATCCTCTTTAGAAAAATATGCAACCTCCAATGAGTTTCCTGATGATACCCTGAACTTCATAAAGACGCATCCACTCATGGACGAGGCAGTGCCTTCCATTATCAACAGACCTTGGTTCCTGAGAACAATGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004033-'9-10,'9-9,10-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.333 C2=0.019
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(16.5=100)
A:
PF0140314=Sema=FE(10.1=100)
C2:
PF0140314=Sema=FE(11.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTATTCCCCAGGGTGGCTC
R:
AGGATGATCCAGCACAACAGC
Band lengths:
243-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]