BtaEX6041240 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012945 | PDE6A
Description
phosphodiesterase 6A, cGMP-specific, rod, alpha [Source:HGNC Symbol;Acc:HGNC:8785]
Coordinates
chr7:63194254-63195407:-
Coord C1 exon
chr7:63195344-63195407
Coord A exon
chr7:63194997-63195071
Coord C2 exon
chr7:63194254-63194337
Length
75 bp
Sequences
Splice sites
3' ss Seq
AGGGTGTCTGCCTGTTGCAGGTG
3' ss Score
8.83
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
Exon sequences
Seq C1 exon
GGCCATGATGATGACCGCCTGTGATCTCTCAGCCATCACCAAGCCTTGGGAGGTGCAGAGCAAG
Seq A exon
GTGGCTCTGCTGGTTGCTGCTGAATTCTGGGAACAAGGTGACCTGGAGCGCACGGTGCTGCAACAGAATCCCATT
Seq C2 exon
CCCATGATGGACAGAAACAAGGCGGATGAACTCCCTAAGCTTCAGGTCGGCTTCATCGACTTTGTTTGCACCTTTGTCTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012945-'20-21,'20-20,21-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.200 C2=0.214
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(8.4=100)
A:
PF0023314=PDEase_I=FE(9.6=100)
C2:
PF0023314=PDEase_I=FE(10.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGATGATGACCGCCTGTG
R:
GTAGACAAAGGTGCAAACAAAGTCG
Band lengths:
143-218
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]