RnoEX6058944 @ rn6
Exon Skipping
Gene
ENSRNOG00000017816 | Pde6a
Description
phosphodiesterase 6A [Source:RGD Symbol;Acc:1306835]
Coordinates
chr18:56609191-56611439:+
Coord C1 exon
chr18:56609191-56609254
Coord A exon
chr18:56609489-56609563
Coord C2 exon
chr18:56611356-56611439
Length
75 bp
Sequences
Splice sites
3' ss Seq
ATCGGGTCCATTGGTCGCAGGTG
3' ss Score
4.95
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
Exon sequences
Seq C1 exon
GGCCATGATGATGACCGCCTGTGACCTCTCAGCCATCACCAAGCCCTGGGAGGTGCAGAGCAAG
Seq A exon
GTGGCTCTGCTGGTGGCTGCTGAATTCTGGGAGCAAGGTGACCTGGAGCGCACAGTGCTGCAACAGAATCCCATT
Seq C2 exon
CCCATGATGGACAGAAACAAGGCAGATGAACTCCCCAAGCTTCAGGTCGGCTTCATTGATTTTGTGTGCACCTTTGTCTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017816-'19-29,'19-24,20-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.200 C2=0.214
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(8.4=100)
A:
PF0023314=PDEase_I=FE(9.6=100)
C2:
PF0023314=PDEase_I=FE(10.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCATGATGATGACCGCC
R:
AGACAAAGGTGCACACAAAATCA
Band lengths:
143-218
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]