GgaEX6050553 @ galGal4
Exon Skipping
Gene
ENSGALG00000015373 | PDE6B
Description
Phosphodiesterase 6b subunit [Source:UniProtKB/TrEMBL;Acc:F1NA42]
Coordinates
chrZ:53315161-53316768:-
Coord C1 exon
chrZ:53316705-53316768
Coord A exon
chrZ:53315896-53315970
Coord C2 exon
chrZ:53315161-53315244
Length
75 bp
Sequences
Splice sites
3' ss Seq
TTCCCTCTTTGGCAATGTAGGTA
3' ss Score
6.88
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GGCCATGATGATGACTGCGTGTGACTTGTCAGCAATTACTAAGCCTTGGGAAGTCCAGAGTAAG
Seq A exon
GTAGCTCTCCTGGTAGCAGCTGAGTTCTGGGAGCAAGGGGACTTAGAGATAAGCGTCCTTCAGCAGCAGCCCATT
Seq C2 exon
CCCATGATGGACAGGAGGAAAGCTGCTGAACTCCCAAAGCTTCAAGTGGGTTTCATCGACTTTGTGTGCACATTTGTCTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015373-'19-20,'19-18,20-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(8.4=100)
A:
PF0023314=PDEase_I=FE(9.6=100)
C2:
PF0023314=PDEase_I=FE(10.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCATGATGATGACTGCGTG
R:
AGACAAATGTGCACACAAAGTCG
Band lengths:
143-218
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]