MmuEX6019409 @ mm10
Exon Skipping
Gene
ENSMUSG00000029491 | Pde6b
Description
phosphodiesterase 6B, cGMP, rod receptor, beta polypeptide [Source:MGI Symbol;Acc:MGI:97525]
Coordinates
chr5:108428180-108429189:+
Coord C1 exon
chr5:108428180-108428243
Coord A exon
chr5:108428457-108428531
Coord C2 exon
chr5:108429106-108429189
Length
75 bp
Sequences
Splice sites
3' ss Seq
TAACTTTTGTGTGTGCTTAGGTT
3' ss Score
9.66
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
Exon sequences
Seq C1 exon
GGCCATGATGATGACTGCATGTGACCTGTCTGCTATCACCAAACCCTGGGAAGTCCAGAGCAAG
Seq A exon
GTTGCTCTTCTGGTGGCTGCTGAGTTCTGGGAACAGGGGGACTTGGAGAGGACTGTCTTGGATCAACAGCCCATT
Seq C2 exon
CCCATGATGGACCGGAACAAAGCAGCTGAGCTCCCTAAGCTGCAAGTTGGTTTCATTGACTTCGTATGTACTTTCGTATACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029491-'33-34,'33-33,34-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.040 C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(8.4=100)
A:
PF0023314=PDEase_I=FE(9.6=100)
C2:
PF0023314=PDEase_I=FE(10.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCATGATGATGACTGCATG
R:
ACGAAAGTACATACGAAGTCAATGA
Band lengths:
141-216
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types