HsaEX0046267 @ hg19
Exon Skipping
Gene
ENSG00000133256 | PDE6B
Description
phosphodiesterase 6B, cGMP-specific, rod, beta [Source:HGNC Symbol;Acc:8786]
Coordinates
chr4:658670-660403:+
Coord C1 exon
chr4:658670-658733
Coord A exon
chr4:659044-659118
Coord C2 exon
chr4:660320-660403
Length
75 bp
Sequences
Splice sites
3' ss Seq
CTGCCTTCCTGTGCCTCCAGGTC
3' ss Score
11.96
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
Exon sequences
Seq C1 exon
GGCCATGATGATGACAGCCTGCGACCTGTCTGCCATCACCAAGCCCTGGGAAGTCCAGAGCAAG
Seq A exon
GTCGCACTTCTCGTGGCTGCTGAGTTCTGGGAGCAAGGTGACTTGGAAAGGACAGTCTTGGATCAGCAGCCCATT
Seq C2 exon
CCTATGATGGACCGGAACAAGGCGGCCGAGCTCCCCAAGCTGCAAGTGGGCTTCATCGACTTCGTGTGCACATTCGTGTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133256_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.032 C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(8.4=100),PF0771711=OB_NTP_bind=PD(10.0=63.6)
A:
PF0023314=PDEase_I=FE(29.4=100)
C2:
PF0023314=PDEase_I=FE(10.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGATGATGACAGCCTGCGAC
R:
CGAATGTGCACACGAAGTCGA
Band lengths:
136-211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)