BtaEX6032561 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017480 | PDE6B
Description
phosphodiesterase 6B, cGMP-specific, rod, beta [Source:HGNC Symbol;Acc:HGNC:8786]
Coordinates
chr6:108845419-108847266:+
Coord C1 exon
chr6:108845419-108845482
Coord A exon
chr6:108845801-108845875
Coord C2 exon
chr6:108847183-108847266
Length
75 bp
Sequences
Splice sites
3' ss Seq
GCCTTCTGTGCGCCTTTCAGGTT
3' ss Score
11.12
5' ss Seq
ATCGTGAGT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GGCCATGATGATGACGGCATGTGACCTGTCTGCCATCACCAAGCCCTGGGAAGTCCAGAGCAAG
Seq A exon
GTTGCTCTGCTGGTGGCAGCTGAGTTCTGGGAGCAAGGGGACTTGGAGAGGACGGTTCTGGATCAGCAGCCCATC
Seq C2 exon
CCAATGATGGACCGGAACAAGGCAGCTGAGCTCCCCAAGCTACAGGTCGGCTTCATCGACTTCGTGTGCACGTTTGTGTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017480-'21-22,'21-21,22-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.027 C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(10.3=100)
A:
PF0023314=PDEase_I=FE(11.8=100)
C2:
PF0023314=PDEase_I=FE(13.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGATGACGGCATGTGACC
R:
CTTGTACACAAACGTGCACAC
Band lengths:
143-218
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]