RnoEX0064380 @ rn6
Exon Skipping
Gene
ENSRNOG00000000065 | Pde6b
Description
phosphodiesterase 6B [Source:RGD Symbol;Acc:1311039]
Coordinates
chr14:2331046-2332044:-
Coord C1 exon
chr14:2331981-2332044
Coord A exon
chr14:2331693-2331767
Coord C2 exon
chr14:2331046-2331129
Length
75 bp
Sequences
Splice sites
3' ss Seq
TAACTTTTGTGTGTGCTCAGGTT
3' ss Score
9.04
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
Exon sequences
Seq C1 exon
GGCCATGATGATGACTGCATGTGACCTGTCTGCTATCACCAAGCCCTGGGAAGTCCAGAGCAAG
Seq A exon
GTTGCTCTTCTGGTGGCTGCTGAGTTCTGGGAACAGGGGGACCTGGAGAGGACTGTCCTGGACCAACAGCCCATT
Seq C2 exon
CCCATGATGGACCGGAACAAAGCAGCTGAGCTCCCCAAGCTACAAGTTGGCTTCATCGACTTCGTATGTACTTTCGTGTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000065-'19-24,'19-23,22-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.040 C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(8.4=100)
A:
PF0023314=PDEase_I=FE(9.6=100)
C2:
PF0023314=PDEase_I=FE(10.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCATGATGATGACTGCATG
R:
TGTACACGAAAGTACATACGAAGTCG
Band lengths:
146-221
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]