DreEX6084131 @ danRer10
Exon Skipping
Gene
ENSDARG00000011671 | pde6b
Description
phosphodiesterase 6B, cGMP-specific, rod, beta [Source:ZFIN;Acc:ZDB-GENE-090421-2]
Coordinates
chr21:20333428-20334199:+
Coord C1 exon
chr21:20333428-20333491
Coord A exon
chr21:20333569-20333643
Coord C2 exon
chr21:20334116-20334199
Length
75 bp
Sequences
Splice sites
3' ss Seq
TGTCAATTCATCCATCCTAGGTT
3' ss Score
7.71
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
Exon sequences
Seq C1 exon
GGCCATGATGATGACAGCGTGTGATCTCTCAGCTATCACAAAGCCATGGGAGGTGCAGAGCAAG
Seq A exon
GTTGCCCTCTCTGTAGCAGCTGAATTCTGGGAGCAGGGTGACCTTGAGAGGACCGTTCTTGAGCAACAGCCTATT
Seq C2 exon
CCCATGATGGACAGAAACAAAGCTGCAGAGCTGCCGAAGCTTCAGTGTGGTTTTATTGACTTCGTCTGTACTTTCGTCTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011671-'17-20,'17-19,18-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.080 C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(8.4=100),PF0771711=OB_NTP_bind=PD(9.3=63.6)
A:
PF0023314=PDEase_I=FE(9.6=100)
C2:
PF0023314=PDEase_I=FE(10.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATGATGATGACAGCGTGT
R:
ACGAAGTCAATAAAACCACACTGA
Band lengths:
128-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]