MmuEX6001886 @ mm10
Exon Skipping
Gene
ENSMUSG00000024575 | Pde6a
Description
phosphodiesterase 6A, cGMP-specific, rod, alpha [Source:MGI Symbol;Acc:MGI:97524]
Coordinates
chr18:61281521-61284089:+
Coord C1 exon
chr18:61281521-61281584
Coord A exon
chr18:61281828-61281902
Coord C2 exon
chr18:61284006-61284089
Length
75 bp
Sequences
Splice sites
3' ss Seq
ATCGGGTCCATCGGTTGCAGGTG
3' ss Score
6.37
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GGCCATGATGATGACCGCCTGTGATCTCTCAGCCATCACCAAACCCTGGGAGGTACAGAGCAAG
Seq A exon
GTGGCTCTGCTGGTGGCTGCTGAATTCTGGGAGCAAGGTGACCTGGAGCGCACAGTGCTGCAGCAGAATCCCATT
Seq C2 exon
CCCATGATGGACAGAAACAAGGCGGATGAGCTCCCCAAGCTTCAAGTCGGCTTCATCGACTTTGTGTGCACTTTTGTCTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024575_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.216 C2=0.246
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(17.6=100)
A:
PF0023314=PDEase_I=FE(21.0=100)
C2:
PF0023314=PDEase_I=FE(10.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCATGATGATGACCGCC
R:
AGACAAAAGTGCACACAAAGTCG
Band lengths:
143-218
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types