MmuEX6001886 @ mm9
Exon Skipping
Gene
ENSMUSG00000024575 | Pde6a
Description
phosphodiesterase 6A, cGMP-specific, rod, alpha [Source:MGI Symbol;Acc:MGI:97524]
Coordinates
chr18:61441175-61443743:+
Coord C1 exon
chr18:61441175-61441238
Coord A exon
chr18:61441482-61441556
Coord C2 exon
chr18:61443660-61443743
Length
75 bp
Sequences
Splice sites
3' ss Seq
ATCGGGTCCATCGGTTGCAGGTG
3' ss Score
6.37
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GGCCATGATGATGACCGCCTGTGATCTCTCAGCCATCACCAAACCCTGGGAGGTACAGAGCAAG
Seq A exon
GTGGCTCTGCTGGTGGCTGCTGAATTCTGGGAGCAAGGTGACCTGGAGCGCACAGTGCTGCAGCAGAATCCCATT
Seq C2 exon
CCCATGATGGACAGAAACAAGGCGGATGAGCTCCCCAAGCTTCAAGTCGGCTTCATCGACTTTGTGTGCACTTTTGTCTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024575-'18-21,'18-20,19-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.218 C2=0.239
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=PU(20.4=95.0)
A:
PF0023314=PDEase_I=FE(21.0=100)
C2:
PF0023314=PDEase_I=FE(23.5=100),PF116803=DUF3276=PU(9.5=20.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCATGATGATGACCGCC
R:
AGACAAAAGTGCACACAAAGTCG
Band lengths:
143-218
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: