GgaEX6050553 @ galGal3
Exon Skipping
Gene
ENSGALG00000015373 | Q802E5_CHICK
Description
NA
Coordinates
chrZ:52373397-52375004:-
Coord C1 exon
chrZ:52374941-52375004
Coord A exon
chrZ:52374132-52374206
Coord C2 exon
chrZ:52373397-52373480
Length
75 bp
Sequences
Splice sites
3' ss Seq
TTCCCTCTTTGGCAATGTAGGTA
3' ss Score
6.88
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GGCCATGATGATGACTGCGTGTGACTTGTCAGCAATTACTAAGCCTTGGGAAGTCCAGAGTAAG
Seq A exon
GTAGCTCTCCTGGTAGCAGCTGAGTTCTGGGAGCAAGGGGACTTAGAGATAAGCGTCCTTCAGCAGCAGCCCATT
Seq C2 exon
CCCATGATGGACAGGAGGAAAGCTGCTGAACTCCCAAAGCTTCAAGTGGGTTTCATCGACTTTGTGTGCACATTTGTCTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015373-'17-18,'17-17,19-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(10.5=100)
A:
PF0023314=PDEase_I=FE(9.6=100)
C2:
PF0023314=PDEase_I=FE(10.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCATGATGATGACTGCGTG
R:
AGACAAATGTGCACACAAAGTCG
Band lengths:
143-218
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]