BtaEX6041242 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012945 | PDE6A
Description
phosphodiesterase 6A, cGMP-specific, rod, alpha [Source:HGNC Symbol;Acc:HGNC:8785]
Coordinates
chr7:63190542-63194337:-
Coord C1 exon
chr7:63194254-63194337
Coord A exon
chr7:63191555-63191702
Coord C2 exon
chr7:63190542-63191147
Length
148 bp
Sequences
Splice sites
3' ss Seq
AGAGGCTCTGTCTCTTGCAGGAA
3' ss Score
9.79
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
CCCATGATGGACAGAAACAAGGCGGATGAACTCCCTAAGCTTCAGGTCGGCTTCATCGACTTTGTTTGCACCTTTGTCTACAAG
Seq A exon
GAATTCTCCCGTTTCCACGAGGAGATCACTCCCATGCTAGATGGGATTACCAACAACCGCAAGGAGTGGAAAGCGCTTGCTGATGAGTATGAGACCAAGATGAAGGGGCTGGAGGAGGAGAAGCAGAAACAGCAGGCAGCCAACCAAG
Seq C2 exon
CAGCCGCAGGAAGTCAACACGGCGGAAAGCAACCTGGGGGCGGGCCTGCATCCAAGTCTTGCTGCGTCCAATAGCAGAGCGAGGACCCAGGGCCCAGGCCGGCCCCACCCTTCACCGACGAGAGCACCCAGGCCAGTGGGAAACCATACGCCACCTGCTCGAGAAGTCAGAGTTGTGGGGTTTGAAAACTGAAAGAGAATTTAGTTTACATCTTTCCTAGTGGCTTTCAAGCCTCTTTTTCAGCTGTGAGAACTTTTTATTGAATGACAACCAACATTTTAGCTTTCACAGACTCAAACATTAGTGCCAGACTCACCTGCTTACCTAGAATCTTTTGTGTTCTTATACTTTCATTTTATAGTACACAAATATGCAATCATTCACAAAAGTAGAGAATTACACAATGAATTGACTCCTACCCATCATGCAGATTCTAACATCAGGATTTTTGCTGCATTTGCTTCATCTGTCCTTTTAGAGTTTTCTTTTTTTCTTAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012945-'22-23,'22-22,23-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.214 A=0.340 C2=0.917
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(10.8=100)
A:
PF0023314=PDEase_I=PD(7.6=38.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACAAGGCGGATGAACTCCC
R:
ACTCTGACTTCTCGAGCAGGT
Band lengths:
243-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]