HsaEX6100581 @ hg38
Exon Skipping
Gene
ENSG00000132915 | PDE6A
Description
phosphodiesterase 6A [Source:HGNC Symbol;Acc:HGNC:8785]
Coordinates
chr5:149859892-149866253:-
Coord C1 exon
chr5:149866170-149866253
Coord A exon
chr5:149863119-149863266
Coord C2 exon
chr5:149859892-149860971
Length
148 bp
Sequences
Splice sites
3' ss Seq
GCACATACTCTCTCTTCTAGGAA
3' ss Score
10.02
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
CCCATGATGGACAGAAACAAAGCAGATGAACTCCCTAAGCTTCAAGTCGGCTTCATTGACTTTGTTTGCACCTTCGTCTACAAG
Seq A exon
GAATTCTCCCGTTTCCACGAGGAGATCACCCCAATGTTGGACGGGATCACCAACAATCGCAAGGAGTGGAAGGCGCTTGCTGATGAGTACGATGCCAAGATGAAGGTGCAGGAGGAGAAGAAGCAGAAACAGCAGTCGGCCAAGTCAG
Seq C2 exon
CAGCCGCAGGAAATCAGCCGGGGGGAAACCCCAGCCCAGGGGGTGCAACTACATCCAAGTCCTGCTGCATCCAGTAACACCACTGGGGATGTGCTGGCTGGACGGCACCACCCTTTCCTGGGAAGAGATGACTCAAGCCAGTGGAAGACCACACACCTTGAGAAGTAGAAGAGTCATAGGATTTGAAAGCTGTTAGAGAATTTAGCTTCCAGGACTGTTCAATCTTTTGGCTTCCCTGGGCCACATTGGAAGAATTGTCTTGGGTCACACATAAAATACAGTAACACTAATGATAGCTGTTGAACTTAAAAAAAAAAATCGCCAAAAAAAAAAATTTCATAATGTTTTAAGAAAGTTTATGAATTTGTGTTGGGCCGCATTCAAAGCCGTCCTGGGCTGCATGTGGCCCACGGGCCGTGGGTTGAACAAGCTTGGCTTATACCTTATCCAGTGGCTTTTAAACATTCTTTTAGTCTTGAGAACTGCCTATTGAGCTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132915-'50-53,'50-49,54-53
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.211 A=0.316 C2=0.840
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(10.8=100)
A:
PF0023314=PDEase_I=PD(7.6=38.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCATGATGGACAGAAACAAAGC
R:
CTCAAGGTGTGTGGTCTTCCA
Band lengths:
246-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains