RnoEX0064364 @ rn6
Exon Skipping
Gene
ENSRNOG00000017816 | Pde6a
Description
phosphodiesterase 6A [Source:RGD Symbol;Acc:1306835]
Coordinates
chr18:56611356-56616627:+
Coord C1 exon
chr18:56611356-56611439
Coord A exon
chr18:56613162-56613309
Coord C2 exon
chr18:56615961-56616627
Length
148 bp
Sequences
Splice sites
3' ss Seq
ACTTCACTTCTCCTCTCCAGGAA
3' ss Score
10.31
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
CCCATGATGGACAGAAACAAGGCAGATGAACTCCCCAAGCTTCAGGTCGGCTTCATTGATTTTGTGTGCACCTTTGTCTATAAG
Seq A exon
GAATTCTCCCGGTTTCATGAGGAGATCACACCCATGTTGGATGGGATCACTAACAACCGTAAGGAGTGGAAGGCGCTGGCTGATGAGTACGAGGCCAGGATGAAAGCATTGGAGGAGGAGAAGCAGAAGCAGCAGGCAGCCAAGCAAG
Seq C2 exon
CTGCTTCCGGGAACCAGCCAGGAGGGAACCCCAGTCCAGGGGGTGCACCTGCATCCAAGTCCTGTTGCATCCAGTAGCTGAGCACACTGCCAGCAGGGGGCACGGCGCTCAGGAAGGAAGAGGTCACGAAGGCCACTAGACAGTTAAAGACTCAGGAGTTGAGAGGTGGCGGCAGACACAGCAGGCATCTATATCATCAAATGGTCTTAGACGTTGTTTCTGCTTTGTTTTGTTTTGTTTTGCTTTGTTTTAGACAGCTCTGTCTGGCCTGAAACTCTCTATGTAGCCGGTGTTGGCCTTGAACTCACAGACATCCACCTGCCTCTGTGTTCTGAGTGCTGGGACCACACATGCACCCCCACATAGGTCTTAGAGATTGTTTTTAATCTTAAAAAGTCCATTGAATTTAGCCCAATTTTCTATACCGACTTGATAATTTTTTTGTTCTTATGATGCTTGTGATTCTTATAAGCTCTTTAAACTTAGTGTTTTATTATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017816-'24-32,'24-30,25-32
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.214 A=0.320 C2=0.840
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(10.8=100)
A:
PF0023314=PDEase_I=PD(7.6=38.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACTCCCCAAGCTTCAGGT
R:
ATAGATGCCTGCTGTGTCTGC
Band lengths:
250-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]