MmuEX6001884 @ mm9
Exon Skipping
Gene
ENSMUSG00000024575 | Pde6a
Description
phosphodiesterase 6A, cGMP-specific, rod, alpha [Source:MGI Symbol;Acc:MGI:97524]
Coordinates
chr18:61443660-61449578:+
Coord C1 exon
chr18:61443660-61443743
Coord A exon
chr18:61445567-61445714
Coord C2 exon
chr18:61447787-61449578
Length
148 bp
Sequences
Splice sites
3' ss Seq
ACTTCTGCACTTCTCCCCAGGAG
3' ss Score
9.17
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
CCCATGATGGACAGAAACAAGGCGGATGAGCTCCCCAAGCTTCAAGTCGGCTTCATCGACTTTGTGTGCACTTTTGTCTATAAG
Seq A exon
GAGTTCTCCCGATTTCATGAGGAGATTACACCCATGCTGGATGGGATCACTAACAACCGCAAGGAATGGAAGGCGCTGGCTGATGAGTACGAAGCCAAGATGAAGGCCCTGGAGGAGGAGAAGCAGAAGCAGCAGGCAGCCAAGCAAG
Seq C2 exon
CTGCTTCCGGGAACCAGCCAGGAGGGAACCCCACTCCAGGGGGTGCACCTGCATCTAAGTCCTGTTGCATCCAGTAGCTGACTGCACTGCGAGCAGGGGGCACAGCCCTCAGGAAGGAGGAGGTCACCCTGGCACTGGACAGTTAAAGAACCAGGAGCTTGGAAGTGGTGGCAAACACAGCAGGCATCTATATCATCAAATGGTCTTAGACATTGGTTCTGTTCTGTTCTGTTCTGTTCTGTTCTGTTCTGTTCTGTTCTGTTCTGTTCTGTTCTGTTCTGTCCTGTCCTGTTCTGTTCTGTTTTAGACAGCTCTGGCTGGCCTGGAACTCTCTATGTAGACTGGGCTGGCCTCAAACTCACAGGCCTCCACCTGCCTCTGTGTCCTGAGTTCTGAGTTAATAAGCAAGCACCATCACACAGGGCTTAGAGATTGTGTTTAATTCTAAAAAGTCTATCGAGTCTAGCCTAATATTCTAGACTTCATATACTGACTTGATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024575-'20-23,'20-22,21-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.239 A=0.305 C2=0.849
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(23.5=100),PF116803=DUF3276=PU(9.5=20.7)
A:
PF0023314=PDEase_I=PD(16.8=40.0),PF116803=DUF3276=FE(77.8=100),PF141951=DUF4316=PU(81.1=86.0)
C2:
PF116803=DUF3276=PD(9.5=23.1),PF141951=DUF4316=PD(15.1=30.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAACAAGGCGGATGAGCT
R:
TGTGTTTGCCACCACTTCCAA
Band lengths:
252-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: