BtaEX6046102 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000040585 | NR6A1
Description
nuclear receptor subfamily 6, group A, member 1 [Source:HGNC Symbol;Acc:HGNC:7985]
Coordinates
chr11:95570066-95586813:-
Coord C1 exon
chr11:95586573-95586813
Coord A exon
chr11:95576633-95576688
Coord C2 exon
chr11:95570066-95570220
Length
56 bp
Sequences
Splice sites
3' ss Seq
TATTTTATATTTACTTCCAGCAA
3' ss Score
7.31
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TCTGTTCCAGATGATCGCGCTGAACAACGAACCTGTCTCATTTGTGGGGACCGTGCCACAGGCTTACACTATGGAATCATCTCCTGTGAGGGCTGCAAAGGGTTTTTCAAGCGGAGCATTTGCAACAAGCGGGTATACCGGTGCAGTCGTGACAAGAACTGTGTCATGTCTCGGAAGCAGAGGAACAGGTGCCAGTACTGCCGCCTGCTCAAATGCCTCCAGATGGGGATGAACCGGAAAG
Seq A exon
CAATCAGAGAAGATGGCATGCCCGGAGGCCGGAATAAGAGCATTGGGCCAGTCCAG
Seq C2 exon
ATATCAGAGGAAGAGATCGAAAGGATTATGTCTGGGCAAGAATTTGAGGAAGAGGCCAATCATTGGAGCAACCATGGTGACAGCGACCACAGTTCCCCTGGGAACAGGGCTTCAGAGAGCAACCAGCCCTCACCCGGCTCTACACTCTCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040585-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=0.921 C2=0.885
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=WD(100=94.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCCTCCAGATGGGGATGAA
R:
TCTCTGAAGCCCTGTTCCCAG
Band lengths:
147-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]