GgaEX1040307 @ galGal3
Exon Skipping
Gene
ENSGALG00000001073 | F1NVM8_CHICK
Description
NA
Coordinates
chr17:10184821-10189616:-
Coord C1 exon
chr17:10189370-10189616
Coord A exon
chr17:10186889-10186944
Coord C2 exon
chr17:10184821-10184978
Length
56 bp
Sequences
Splice sites
3' ss Seq
ATTTGGTTGTGTTCTTTCAGCAA
3' ss Score
8.08
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
TTCTCTTCTCTTGCAGATGACCGGGTTGATCAGCGAACCTGCCTGATCTGCGGGGACAGAGCTACGGGTCTGCACTATGGCATCATCTCCTGCGAGGGCTGCAAGGGGTTTTTCAAAAGGAGCATTTGCAACAAGCGGGTTTACAGATGCAGCCGAGACAAGAACTGTGTCATGTCACGCAAGCAGCGCAACAGATGCCAGTACTGCCGGCTGCTCAAATGCCTCCAGATGGGGATGAACCGGAAAG
Seq A exon
CAATCAGAGAGGATGGCATGCCAGGAGGAAGAAACAAAAGTATTGGACCTGTCCAG
Seq C2 exon
ATATCGGAGGAGGAGATTGAAAGAATTATGTCCGGACAAGAATTTGAGGGAGAGGCAAACATGTCATGGAGCAACAATGGAGACAGCGACCACAGTTCCCCTGGAAATGGAGTTTCTGAGAGCAACCAGCCATCACCTGTGTCTACTCCATCTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001073-'0-2,'0-0,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.895 C2=0.868
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=WD(100=84.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCCTCCAGATGGGGATGAA
R:
CCATTTCCAGGGGAACTGTGG
Band lengths:
139-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]