DreEX0051468 @ danRer10
Exon Skipping
Gene
ENSDARG00000101508 | nr6a1a
Description
nuclear receptor subfamily 6, group A, member 1a [Source:ZFIN;Acc:ZDB-GENE-991207-19]
Coordinates
chr8:52913111-52923557:-
Coord C1 exon
chr8:52923327-52923557
Coord A exon
chr8:52918719-52918774
Coord C2 exon
chr8:52913111-52913277
Length
56 bp
Sequences
Splice sites
3' ss Seq
ATTGTGTTTTTTTTCTTCAGCTA
3' ss Score
9.09
5' ss Seq
CAGGTATTA
5' ss Score
7.26
Exon sequences
Seq C1 exon
ATGACCAGGCTGAGCAGCGCTCTTGTCTTATATGTGGAGACCGCGCCACAGGACTGCACTATGGCATTATTTCCTGCGAGGGCTGCAAGGGTTTCTTCAAGCGCAGCATCTGCAACAAGCGTGTGTATCGATGCAGCCGCGACAAAAACTGCGAGATGTCCCGCAAACAGCGCAACCGCTGCCAATACTGCCGCCTGCTCAAGTGCCTGCAGATGGGCATGAACCGCAAAG
Seq A exon
CTATCCGAGAAGATGGCATGCCGGGAGGAAGAAACAAAAGCATCGGCCCTGTACAG
Seq C2 exon
ATTTCCGATGAAGAGATCGAGCGGATTATGTCCGGACAGGAGTTTAAGGATGAAGCCAACATGCCGGAGCACACATGGGGAAACAACGGCGACAGCGACCACAGTTCACCAGGCAATGGAGTCTCGGATGGGAATCAGCCGTCGCCCGTGTCCACACTGTCATCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101508-'1-4,'1-3,2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.930 C2=0.929
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=WD(100=90.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGGGCATGAACCGCAAAG
R:
CATTGCCTGGTGAACTGTGGT
Band lengths:
139-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]