HsaEX6062986 @ hg19
Exon Skipping
Gene
ENSG00000148200 | NR6A1
Description
nuclear receptor subfamily 6, group A, member 1 [Source:HGNC Symbol;Acc:7985]
Coordinates
chr9:127302312-127316849:-
Coord C1 exon
chr9:127316607-127316849
Coord A exon
chr9:127306081-127306136
Coord C2 exon
chr9:127302312-127302466
Length
56 bp
Sequences
Splice sites
3' ss Seq
TGACTTATCTTTCCTTCCAGCTA
3' ss Score
10.21
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TTTCTGTTTCAGATGATCGGGCTGAACAACGAACCTGTCTCATTTGTGGGGACCGCGCTACAGGCTTGCACTATGGGATCATCTCCTGTGAGGGCTGCAAAGGGTTTTTCAAGCGGAGCATTTGCAACAAACGGGTATATCGATGCAGTCGTGACAAGAACTGTGTCATGTCTCGGAAGCAGAGGAACAGGTGCCAGTACTGCCGCCTGCTCAAATGCCTCCAGATGGGGATGAACCGGAAGG
Seq A exon
CTATCAGAGAAGATGGCATGCCTGGAGGCCGGAATAAGAGCATTGGGCCAGTCCAG
Seq C2 exon
ATATCGGAAGAAGAAATCGAAAGGATCATGTCTGGGCAGGAGTTTGAGGAAGAGGCCAATCACTGGAGCAACCATGGTGATAGTGACCACAGTTCCCCTGGGAACAGGGCTTCGGAGAGCAACCAGCCCTCACCAGGCTCCACACTGTCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148200-'4-7,'4-6,5-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.982 C2=0.869
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=WD(100=85.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAATGCCTCCAGATGGGGA
R:
CCAGGGGAACTGTGGTCACTA
Band lengths:
134-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)