RnoEX6016669 @ rn6
Exon Skipping
Gene
ENSRNOG00000013232 | Nr6a1
Description
nuclear receptor subfamily 6, group A, member 1 [Source:MGI Symbol;Acc:MGI:1352459]
Coordinates
chr3:23050576-23065051:-
Coord C1 exon
chr3:23064803-23065051
Coord A exon
chr3:23055241-23055296
Coord C2 exon
chr3:23050576-23050730
Length
56 bp
Sequences
Splice sites
3' ss Seq
CTGTCTCTGTTTCCTTCTAGCTA
3' ss Score
11
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GCTCAGTTTCTGTTCCAGATGATCGAGCGGAACAACGAACATGTCTCATCTGTGGGGACCGTGCTACAGGCTTACACTATGGGATCATCTCCTGCGAGGGCTGCAAGGGTTTTTTCAAGAGGAGCATTTGCAATAAACGGGTGTATCGGTGCAGTCGGGACAAGAACTGTGTCATGTCCCGGAAGCAGAGGAACAGATGCCAGTACTGCCGCCTGCTCAAGTGTCTCCAGATGGGCATGAACAGGAAGG
Seq A exon
CTATCAGAGAAGACGGCATGCCTGGAGGCCGGAACAAGAGCATTGGGCCAGTCCAG
Seq C2 exon
ATATCAGAAGAAGAGATTGAAAGAATCATGTCTGGACAGGAGTTTGAGGAAGAAGCCAATCACTGGAGCAACCATGGTGACAGTGACCACAGTTCTCCTGGGAACAGGGTTTCAGAGAGCAACCAGCCCTCACCAGGCTCCACACTGTCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013232-'3-7,'3-5,4-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.895 C2=0.923
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=WD(100=83.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTCTCCAGATGGGCATGA
R:
TGTTCCCAGGAGAACTGTGGT
Band lengths:
136-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]