MmuEX6100973 @ mm9
Exon Skipping
Gene
ENSMUSG00000063972 | Nr6a1
Description
nuclear receptor subfamily 6, group A, member 1 [Source:MGI Symbol;Acc:MGI:1352459]
Coordinates
chr2:38598327-38615949:-
Coord C1 exon
chr2:38615707-38615949
Coord A exon
chr2:38604356-38604411
Coord C2 exon
chr2:38598327-38598481
Length
56 bp
Sequences
Splice sites
3' ss Seq
CTGTCTACATTTCCTTCTAGCTA
3' ss Score
7.83
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TTTCCGTCCCAGATGATCGAGCTGAACAACGAACCTGTCTCATCTGTGGGGACCGCGCTACGGGCTTGCACTATGGGATCATCTCCTGCGAGGGCTGCAAGGGGTTTTTCAAGAGGAGCATTTGCAACAAACGGGTGTATCGGTGCAGTCGTGACAAGAACTGTGTCATGTCCCGGAAGCAGAGGAACAGATGTCAGTACTGCCGCCTGCTCAAGTGTCTCCAGATGGGCATGAACAGGAAGG
Seq A exon
CTATCAGAGAAGATGGCATGCCTGGAGGCCGGAACAAGAGCATTGGACCAGTCCAG
Seq C2 exon
ATATCAGAAGAAGAAATTGAAAGAATCATGTCTGGACAGGAGTTTGAGGAAGAAGCCAATCACTGGAGCAACCATGGTGACAGCGACCACAGTTCCCCTGGGAACAGGGCTTCAGAGAGCAACCAGCCCTCACCAGGCTCCACACTATCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063972-'10-14,'10-13,11-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=0.955 C2=0.926
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=WD(100=85.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTCTCCAGATGGGCATGA
R:
TCTCTGAAGCCCTGTTCCCAG
Band lengths:
148-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: