DreEX0051471 @ danRer10
Exon Skipping
Gene
ENSDARG00000014480 | nr6a1b
Description
nuclear receptor subfamily 6, group A, member 1b [Source:ZFIN;Acc:ZDB-GENE-040724-202]
Coordinates
chr21:8147005-8153474:+
Coord C1 exon
chr21:8147005-8147232
Coord A exon
chr21:8150840-8150895
Coord C2 exon
chr21:8153323-8153474
Length
56 bp
Sequences
Splice sites
3' ss Seq
ATTGTTTGTTCTGTCTTTAGCAA
3' ss Score
7.49
5' ss Seq
CATGTAAGA
5' ss Score
5.58
Exon sequences
Seq C1 exon
ATGACGGTGGTGAGCGCTGGTGTCTGATCTGTGGGGATCGAGCGTCCGGCCTGCACTATGGTATTATTTCCTGCGAGGGCTGTAAAGGCTTCTTCAAGCGCAGTATCTGCAACAAACGCATCTATCGCTGCAACAGAGACAAGAACTGCCAGATGTCCCGCAAACAGCGCAACCGCTGCCAGTACTGTCGGCTGCAGAAGTGCCTACAGATGGGCATGAACCGCAAGG
Seq A exon
CAATCAGAGAAGACGGGATGCCAGGAGGAAGGAATAAAATGATTGGACCTGTACAT
Seq C2 exon
ATCTCGCTGGAGGAGATTGAACGAATTATGTCTGGCCAGGAGTTTAAAGAAGGATCGGACCTGTCGGATTCGTGGAGCCACGGTTACAGTAACCACAGTTCACCCGGCAACAGTCTCTCTGAGGGCGGCCAGAGCTTATCTTTCTCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014480-'4-4,'4-3,5-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.658 C2=0.272
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=WD(100=90.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGCATCTATCGCTGCAACA
R:
CGTTCAATCTCCTCCAGCGAG
Band lengths:
137-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]