GgaEX1040307 @ galGal4
Exon Skipping
Gene
ENSGALG00000001073 | NR6A1
Description
nuclear receptor subfamily 6, group A, member 1 [Source:HGNC Symbol;Acc:HGNC:7985]
Coordinates
chr17:9464072-9468561:-
Coord C1 exon
chr17:9468309-9468561
Coord A exon
chr17:9466140-9466195
Coord C2 exon
chr17:9464072-9464229
Length
56 bp
Sequences
Splice sites
3' ss Seq
ATTTGGTTGTGTTCTTTCAGCAA
3' ss Score
8.08
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AGCCCTTTCTCTTCTCTTGCAGATGACCGGGTTGATCAGCGAACCTGCCTGATCTGCGGGGACAGAGCTACGGGTCTGCACTATGGCATCATCTCCTGCGAGGGCTGCAAGGGGTTTTTCAAAAGGAGCATTTGCAACAAGCGGGTTTACAGATGCAGCCGAGACAAGAACTGTGTCATGTCACGCAAGCAGCGCAACAGATGCCAGTACTGCCGGCTGCTCAAATGCCTCCAGATGGGGATGAACCGGAAAG
Seq A exon
CAATCAGAGAGGATGGCATGCCAGGAGGAAGAAACAAAAGTATTGGACCTGTCCAG
Seq C2 exon
ATATCGGAGGAGGAGATTGAAAGAATTATGTCCGGACAAGAATTTGAGGGAGAGGCAAACATGTCATGGAGCAACAATGGAGACAGCGACCACAGTTCCCCTGGAAATGGAGTTTCTGAGAGCAACCAGCCATCACCTGTGTCTACTCCATCTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001073-'2-4,'2-2,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.789 C2=0.868
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=WD(100=82.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCCTCCAGATGGGGATGAA
R:
CCATTTCCAGGGGAACTGTGG
Band lengths:
139-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]