BtaEX6046370 @ bosTau6
Exon Skipping
Description
Bos taurus golgin A2 (GOLGA2), mRNA. [Source:RefSeq mRNA;Acc:NM_001192195]
Coordinates
chr11:98886268-98886709:-
Coord C1 exon
chr11:98886647-98886709
Coord A exon
chr11:98886465-98886558
Coord C2 exon
chr11:98886268-98886374
Length
94 bp
Sequences
Splice sites
3' ss Seq
GTTTGGCCTTTCTCCCAAAGGTC
3' ss Score
8.86
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
GAAAAGAAGGAATTTGAGCAGAAGCTTGCAAAGGAGCAAGGGGCTCTGAGAGAACAGCTCCAG
Seq A exon
GTCCACATTCAGACTATCGGAATTTTGGTGTCAGAGAAGACGGAGTTACAGACAGCTCTGGCTCACACCCAGCAGGCAGCCAGGCAGAAAGCAG
Seq C2 exon
GGGAGTCAGAGGATCTTGCTAACCGCCTGCAGTCTTCCAGGCAGCGCGTAGGAGAGCTGGAGCGGACGCTGTCTGCAGTCTCCACGCAGCAGAAGCAGGCCGACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011317-'13-13,'13-11,14-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.556 A=0.438 C2=0.843
Domain overlap (PFAM):
C1:
PF0252012=DUF148=PD(10.3=42.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGAAGGAATTTGAGCAGAAGC
R:
CTGTCGGCCTGCTTCTGC
Band lengths:
167-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]