HsaEX6063199 @ hg19
Exon Skipping
Gene
ENSG00000167110 | GOLGA2
Description
golgin A2 [Source:HGNC Symbol;Acc:4425]
Coordinates
chr9:131027864-131028299:-
Coord C1 exon
chr9:131028249-131028299
Coord A exon
chr9:131028067-131028160
Coord C2 exon
chr9:131027864-131027970
Length
94 bp
Sequences
Splice sites
3' ss Seq
GCTTGGGTTTCCTCCCAAAGGTT
3' ss Score
7.2
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
Exon sequences
Seq C1 exon
GAAAAGAAAGAATGCCACCAAAAGCAGGGAGCCCTAAGGGAGCAGTTACAG
Seq A exon
GTTCACATTCAGACCATAGGGATCCTCGTATCAGAGAAAGCTGAGTTACAGACAGCCCTGGCTCACACTCAGCATGCTGCCAGGCAGAAAGAAG
Seq C2 exon
GAGAGTCTGAAGATCTGGCCAGCCGCCTGCAGTATTCCCGGCGGCGTGTGGGAGAGTTGGAGCGGGCTCTCTCTGCTGTCTCCACGCAGCAGAAGAAGGCAGACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167110-'10-13,'10-12,11-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.536 A=0.430 C2=0.614
Domain overlap (PFAM):
C1:
PF150351=Rootletin=FE(12.9=100),PF113073=DUF3109=FE(17.7=100)
A:
PF150351=Rootletin=FE(23.5=100),PF113073=DUF3109=PD(30.2=90.6)
C2:
PF0157614=Myosin_tail_1=PD(14.5=47.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAATGCCACCAAAAGCAGG
R:
CCTGTCTGCCTTCTTCTGCTG
Band lengths:
151-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)