RnoEX0039171 @ rn6
Exon Skipping
Gene
ENSRNOG00000011884 | Golga2
Description
golgin A2 [Source:RGD Symbol;Acc:620282]
Coordinates
chr3:11328163-11328601:+
Coord C1 exon
chr3:11328163-11328225
Coord A exon
chr3:11328309-11328402
Coord C2 exon
chr3:11328495-11328601
Length
94 bp
Sequences
Splice sites
3' ss Seq
TTGTGGCCTTTTCTCCAAAGGTT
3' ss Score
9.68
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GAGAAGAAGGATTATCAGCAGAAGCTGGCAAAGGAGCAGGGTGCCCTCAGGGAACAACTGCAG
Seq A exon
GTTCACATTCAGACCATAGGCATCCTGGTGTCTGAGAAGGCAGAATTACAGACAGCTCTGGCCCACACTCAGCAAGCAGCTAGGCAGAAAGCAG
Seq C2 exon
GAGAGTCGGAGGATCTTGCCAGCCGTCTACAGTCCTCCCGACAGCGTGTGGGAGAGCTGGAGCGGACGTTGTCTACTGTGTCGACGCAGCAGAAACAGGCAGACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011884-'13-16,'13-14,14-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.524 A=0.406 C2=0.889
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGAAGGATTATCAGCAGAAGC
R:
CCTGTCTGCCTGTTTCTGCTG
Band lengths:
169-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]