GgaEX1001063 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NF84]
Coordinates
chr17:5003886-5005056:+
Coord C1 exon
chr17:5003886-5003948
Coord A exon
chr17:5004189-5004282
Coord C2 exon
chr17:5004950-5005056
Length
94 bp
Sequences
Splice sites
3' ss Seq
CTCCTTTTTCTTTCTCCAAGGTT
3' ss Score
8.94
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
GAAAAGAAGGAGTTTGAACAGAAATTTTCTAAAGAGCAAGCAGCACTGAGAGAACAGCTACAG
Seq A exon
GTTCACATCCAGACGATTGGAATCCTAGTTTCTGAGAAATCTGAGTTGCAGACAGCCCTTGGACATACTCAACAAGCTGCACGGCAGAAATCAG
Seq C2 exon
GAGAAGCTGAAGACCTTGCTGCTCGTTTACAGTCATCTCGCCAGAGGGTATCAGAGCTGGAACGCACTTTGTCCTCCATCTCCATGCAGCAAAAACAGTCAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004881-'12-20,'12-19,13-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=0.438 C2=0.778
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAAGAAGGAGTTTGAACAGAAATT
R:
CTCTGACTGTTTTTGCTGCATGG
Band lengths:
167-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]