MmuEX6100525 @ mm9
Exon Skipping
Gene
ENSMUSG00000002546 | Golga2
Description
golgi autoantigen, golgin subfamily a, 2 [Source:MGI Symbol;Acc:MGI:2139395]
Coordinates
chr2:32154406-32154830:+
Coord C1 exon
chr2:32154406-32154468
Coord A exon
chr2:32154552-32154645
Coord C2 exon
chr2:32154724-32154830
Length
94 bp
Sequences
Splice sites
3' ss Seq
TGGTGGCCTTTTCTCCAAAGGTT
3' ss Score
8.84
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GAGAAGAAGGATTATCAGCAGAAGCTGGCAAAGGAGCAGGGCTCTCTCAGGGAACAGCTGCAG
Seq A exon
GTTCACATTCAGACCATAGGCATCCTGGTGTCTGAGAAGGCAGAATTACAGACGGCCCTGGCCCACACTCAGCAAGCAGCCAGGCAGAAAGCAG
Seq C2 exon
GAGAGTCGGAGGATCTTGCCAGCCGACTACAGTCCTCCCGACAGCGTGTGGGAGAGCTGGAGCGGACACTGTCTACCGTGTCAACGCAACAGAAACAGGCAGACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002546-'13-20,'13-19,15-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.605 A=0.408 C2=0.901
Domain overlap (PFAM):
C1:
PF090796=Cdc6_C=PD(3.3=9.5),PF106024=RPN7=FE(41.7=100)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGAAGGATTATCAGCAGAAGC
R:
TGTCTGCCTGTTTCTGTTGCG
Band lengths:
167-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: