HsaEX6063199 @ hg38
Exon Skipping
Gene
ENSG00000167110 | GOLGA2
Description
golgin A2 [Source:HGNC Symbol;Acc:HGNC:4425]
Coordinates
chr9:128265585-128266020:-
Coord C1 exon
chr9:128265970-128266020
Coord A exon
chr9:128265788-128265881
Coord C2 exon
chr9:128265585-128265691
Length
94 bp
Sequences
Splice sites
3' ss Seq
GCTTGGGTTTCCTCCCAAAGGTT
3' ss Score
7.2
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
Exon sequences
Seq C1 exon
GAAAAGAAAGAATGCCACCAAAAGCAGGGAGCCCTAAGGGAGCAGTTACAG
Seq A exon
GTTCACATTCAGACCATAGGGATCCTCGTATCAGAGAAAGCTGAGTTACAGACAGCCCTGGCTCACACTCAGCATGCTGCCAGGCAGAAAGAAG
Seq C2 exon
GAGAGTCTGAAGATCTGGCCAGCCGCCTGCAGTATTCCCGGCGGCGTGTGGGAGAGTTGGAGCGGGCTCTCTCTGCTGTCTCCACGCAGCAGAAGAAGGCAGACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167110-'21-22,'21-19,22-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.510 A=0.438 C2=0.602
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(13.7=100)
A:
PF0157614=Myosin_tail_1=FE(26.5=100)
C2:
PF0157614=Myosin_tail_1=PD(14.5=47.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAATGCCACCAAAAGCAGG
R:
CCTGTCTGCCTTCTTCTGCTG
Band lengths:
151-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains