GgaEX1001063 @ galGal3
Exon Skipping
Gene
ENSGALG00000004881 | GOLGA2
Description
NA
Coordinates
chr17:5635948-5637118:+
Coord C1 exon
chr17:5635948-5636010
Coord A exon
chr17:5636251-5636344
Coord C2 exon
chr17:5637012-5637118
Length
94 bp
Sequences
Splice sites
3' ss Seq
CTCCTTTTTCTTTCTCCAAGGTT
3' ss Score
8.94
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
GAAAAGAAGGAGTTTGAACAGAAATTTTCTAAAGAGCAAGCAGCACTGAGAGAACAGCTACAG
Seq A exon
GTTCACATCCAGACGATTGGAATCCTAGTTTCTGAGAAATCTGAGTTGCAGACAGCCCTTGGACATACTCAACAAGCTGCACGGCAGAAATCAG
Seq C2 exon
GAGAAGCTGAAGACCTTGCTGCTCGTTTACAGTCATCTCGCCAGAGGGTATCAGAGCTGGAACGCACTTTGTCCTCCATCTCCATGCAGCAAAAACAGTCAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004881-'12-14,'12-13,13-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.298 A=0.438 C2=0.806
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAAGAAGGAGTTTGAACAGAAATT
R:
CTCTGACTGTTTTTGCTGCATGG
Band lengths:
167-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]