BtaEX6046374 @ bosTau6
Exon Skipping
Description
Bos taurus golgin A2 (GOLGA2), mRNA. [Source:RefSeq mRNA;Acc:NM_001192195]
Coordinates
chr11:98883544-98884840:-
Coord C1 exon
chr11:98884699-98884840
Coord A exon
chr11:98883755-98883841
Coord C2 exon
chr11:98883544-98883651
Length
87 bp
Sequences
Splice sites
3' ss Seq
CTTTGTTTTTCACCATCCAGTTT
3' ss Score
7.02
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
TAAGAACAACGAGGACCTGAAGCAGCATAACTCAGAGCTGGAGGAGAAGCTGCGGCTACTGGTGATAGAGAAGTCAGCCATGAAGCTGGGCATTGAGGAGCTACAGAAGAAGCTGGAGATGTCGGAGCTGCTGCTGCAGCAG
Seq A exon
TTTTCTAGTCAACCTGCCCCTGATAGCAGCCAGCAGTTACAGCAGGCCCTGGAGGAGAGGGCACAGCTGGAGACCCACATGGAGCAG
Seq C2 exon
CTGAAGGATTCGCTGAGGCAGCTGCAGGCAGAGAGAGATCAGTATGCGACAAATCTGAAGGAGGAGAATGCCATATGGCAGCAGAAGATGCAGCAGGTGTTGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011317-'18-18,'18-17,19-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.312 A=1.000 C2=0.556
Domain overlap (PFAM):
C1:
NO
A:
PF150701=GOLGA2L5=PU(0.1=0.0)
C2:
PF150701=GOLGA2L5=FE(5.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGAAGCTGGGCATTGAGGA
R:
CCAACACCTGCTGCATCTTCT
Band lengths:
167-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]