GgaEX1001074 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NF84]
Coordinates
chr17:5006160-5007653:+
Coord C1 exon
chr17:5006160-5006301
Coord A exon
chr17:5007294-5007383
Coord C2 exon
chr17:5007546-5007653
Length
90 bp
Sequences
Splice sites
3' ss Seq
CTTTTGATTTTTGTGGGCAGTTC
3' ss Score
7.55
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
CAAAGGTAGTGAGGAAATAAAGCAGCAGAACTCAGAGCTGTCAGAGAAACTCCGCTCCGTGGTTTCTGAGAACTCAGCCATGAAGTTGGATGTGGAAGATTTACATAAGAAACTGGAAATGGCCGAACTGATGATTCAGCAG
Seq A exon
TTCTCAAATCATACGGGCAATGTGGATGCAAACCAGCAGTTACAGATGGCACTGGAAGAGAGGGCAAGTCTGGAAACCCAGATTACTCAG
Seq C2 exon
CTTTCAGAGTCGCTTCACCAGCTCCGGGCAGAAAGAGATCAGTATGTAGAGAAACTGAAGGAAGAGGGGAGCATTTGGCAGCAGCGTGTCCAGCAGCTCTCTGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004881_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.615 A=0.717 C2=0.194
Domain overlap (PFAM):
C1:
NO
A:
PF150701=GOLGA2L5=PU(0.1=0.0)
C2:
PF150701=GOLGA2L5=FE(43.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTCAGAGAAACTCCGCTC
R:
TGCTCCCCTCTTCCTTCAGTT
Band lengths:
179-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]