GgaEX1001074 @ galGal3
Exon Skipping
Gene
ENSGALG00000004881 | GOLGA2
Description
NA
Coordinates
chr17:5638222-5639715:+
Coord C1 exon
chr17:5638222-5638363
Coord A exon
chr17:5639356-5639445
Coord C2 exon
chr17:5639608-5639715
Length
90 bp
Sequences
Splice sites
3' ss Seq
CTTTTGATTTTTGTGGGCAGTTC
3' ss Score
7.55
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
CAAAGGTAGTGAGGAAATAAAGCAGCAGAACTCAGAGCTGTCAGAGAAACTCCGCTCCGTGGTTTCTGAGAACTCAGCCATGAAGTTGGATGTGGAAGATTTACATAAGAAACTGGAAATGGCCGAACTGATGATTCAGCAG
Seq A exon
TTCTCAAATCATACGGGCAATGTGGATGCAAACCAGCAGTTACAGATGGCACTGGAAGAGAGGGCAAGTCTGGAAACCCAGATTACTCAG
Seq C2 exon
CTTTCAGAGTCGCTTCACCAGCTCCGGGCAGAAAGAGATCAGTATGTAGAGAAACTGAAGGAAGAGGGGAGCATTTGGCAGCAGCGTGTCCAGCAGCTCTCTGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004881-'17-21,'17-20,18-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.604 A=0.733 C2=0.194
Domain overlap (PFAM):
C1:
NO
A:
PF150701=GOLGA2L5=PU(0.1=0.0)
C2:
PF150701=GOLGA2L5=FE(5.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTCAGAGAAACTCCGCTC
R:
TGCTCCCCTCTTCCTTCAGTT
Band lengths:
179-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]