DreEX6008907 @ danRer10
Exon Skipping
Gene
ENSDARG00000063197 | golga2
Description
golgin A2 [Source:ZFIN;Acc:ZDB-GENE-081030-1]
Coordinates
chr5:1399907-1402079:-
Coord C1 exon
chr5:1401938-1402079
Coord A exon
chr5:1400317-1400406
Coord C2 exon
chr5:1399907-1400014
Length
90 bp
Sequences
Splice sites
3' ss Seq
TTGCAATGATTATCCTGCAGTTC
3' ss Score
5.35
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
TAATGTGAGTGAGGAGTCCAGGCAGCAGAGCTCTGAATTATCCGAGCAGCTGAAGCTGAGAGTGAATGAAAACAGCGCTCTGAAACTGGAGCTGGAGGATCTGCGCAAACGCCTGGAGATGGCAGACGTCATGCTGCAGCAG
Seq A exon
TTCTCCAGTCAGTCTGGTCCTCCATCTGAACACCAGCAGCTTCAGCTCCTCCTGGAGGAAAAACACCAGTTAGAGAATCACGCAACTCAG
Seq C2 exon
CTGATGGAGTCGGTGGCTCAGCTGCAGGCGGAGAGAGATCAGTACGCTGTACAGATGCAGGAGGATGGACGAGTGTGGAAGGACAAAACAGAGCAGCTCCTGTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063197-'18-20,'18-19,19-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.354 A=1.000 C2=0.361
Domain overlap (PFAM):
C1:
NO
A:
PF150701=GOLGA2L5=PU(0.1=0.0)
C2:
PF150701=GOLGA2L5=FE(5.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGCGCTCTGAAACTGGAG
R:
TGAGACAGGAGCTGCTCTGTT
Band lengths:
179-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]