MmuEX6100522 @ mm10
Exon Skipping
Gene
ENSMUSG00000002546 | Golga2
Description
golgi autoantigen, golgin subfamily a, 2 [Source:MGI Symbol;Acc:MGI:2139395]
Coordinates
chr2:32302142-32303003:+
Coord C1 exon
chr2:32302142-32302283
Coord A exon
chr2:32302703-32302792
Coord C2 exon
chr2:32302896-32303003
Length
90 bp
Sequences
Splice sites
3' ss Seq
CCCTCATTTCCCTCGCACAGTTT
3' ss Score
8.2
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
Exon sequences
Seq C1 exon
CAAAAGCAATGAGGACCTGAGGCAGCAGAACTCAGAACTGGAAGAGAAACTCCGAGTCCTGGTGGCAGAGAAAGCAGCTGCACAGTTGGGGGTGGAGGAGCTGCAGAAGAAGTTAGAGATGTCAGAGCTGCTGCTGCAGCAG
Seq A exon
TTTTCTAGTCAGTCTTCGGCCGCAGGCGGTAATGAGCAGTTACAACATGCCATGGAGGAGCGGGCTCAGCTGGAGACCCATGTTAGCCAG
Seq C2 exon
CTGATGGAATCACTGAAGCAGCTCCAGGTGGAGAGAGACCAGTATGCGGAGAACCTAAAAGGAGAGAGTGCCATGTGGCAGCAGAGGGTACAGCAAATGGCGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002546-'34-32,'34-31,36-32
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.273 A=0.942 C2=0.815
Domain overlap (PFAM):
C1:
NO
A:
PF150701=GOLGA2L5=PU(0.1=0.0)
C2:
PF150701=GOLGA2L5=FE(5.7=100),PF0396210=Mnd1=PU(8.4=33.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGAAAGCAGCTGCACAGT
R:
ATTTGCTGTACCCTCTGCTGC
Band lengths:
175-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types