HsaEX7005624 @ hg38
Exon Skipping
Gene
ENSG00000167110 | GOLGA2
Description
golgin A2 [Source:HGNC Symbol;Acc:HGNC:4425]
Coordinates
chr9:128261454-128262704:-
Coord C1 exon
chr9:128262563-128262704
Coord A exon
chr9:128261668-128261757
Coord C2 exon
chr9:128261454-128261561
Length
90 bp
Sequences
Splice sites
3' ss Seq
TCTCGCTCTTCACCATCCAGTTT
3' ss Score
7.23
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CCAAAGCAATGAGGACCTGAAGCAAGAGAAATCAGAATTGGAAGAGAAGCTTCGGGTCCTAGTGACTGAGAAGGCTGGCATGCAGCTTAACTTGGAAGAATTGCAAAAGAAGTTAGAGATGACGGAACTCCTGCTTCAACAG
Seq A exon
TTTTCAAGCCGGTGTGAAGCCCCTGATGCTAACCAGCAGTTACAGCAGGCCATGGAGGAGCGGGCACAGCTGGAAGCACACCTGGGGCAG
Seq C2 exon
GTAATGGAGTCGGTTAGACAACTACAAATGGAGAGAGATAAATATGCGGAGAATCTCAAAGGAGAGAGCGCCATGTGGCGGCAGAGGATGCAGCAGATGTCAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167110-'25-30,'25-28,28-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.312 A=0.793 C2=0.822
Domain overlap (PFAM):
C1:
NO
A:
PF150701=GOLGA2L5=PU(0.1=0.0)
C2:
PF150701=GOLGA2L5=FE(46.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCGGGTCCTAGTGACTGA
R:
CATGGCGCTCTCTCCTTTGAG
Band lengths:
169-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains