RnoEX6016431 @ rn6
Exon Skipping
Gene
ENSRNOG00000011884 | Golga2
Description
golgin A2 [Source:RGD Symbol;Acc:620282]
Coordinates
chr3:11331559-11332524:+
Coord C1 exon
chr3:11331559-11331700
Coord A exon
chr3:11332219-11332308
Coord C2 exon
chr3:11332417-11332524
Length
90 bp
Sequences
Splice sites
3' ss Seq
CCCTCCTTTCCCTCATGCAGTTC
3' ss Score
9.68
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CAAAAGTAATGAGGACCTGAGGCAGCAGAACTCAGAACTGGAAGAGAAACTTCGAGTCCTGGTGGCAGAGAAAGCAGCTGCACAGTTGGGGGCAGAGGAGCTGCAGAAGAAGTTAGAGATGTCAGAGCTGCTGCTGCAACAG
Seq A exon
TTCTCTAGCCAATCTGAGGCTTCTGGCAGTAATGAGCAGTTGCAACAGGCCATGGAGGAGCGGGCTCAGCTGGAGAGCCATGTTGGCCAG
Seq C2 exon
CTGATGGAGTCACTGAAACAGCTCCAGGTGGAGAGAGACCAGTACGCAGAGAACCTGAAAGGAGAGAGTGCCATGTGGCAGCAGAGGGTACAGCAGATGGCAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011884-'19-26,'19-25,21-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.312 A=1.000 C2=0.944
Domain overlap (PFAM):
C1:
NO
A:
PF150701=GOLGA2L5=PU(0.1=0.0)
C2:
PF150701=GOLGA2L5=FE(5.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAATGAGGACCTGAGGCAGCA
R:
CCACCTGGAGCTGTTTCAGTG
Band lengths:
167-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]