BtaEX6046378 @ bosTau6
Exon Skipping
Description
Bos taurus golgin A2 (GOLGA2), mRNA. [Source:RefSeq mRNA;Acc:NM_001192195]
Coordinates
chr11:98881241-98882901:-
Coord C1 exon
chr11:98882564-98882901
Coord A exon
chr11:98882120-98882233
Coord C2 exon
chr11:98881241-98881486
Length
114 bp
Sequences
Splice sites
3' ss Seq
CTGCCCTTCTCTCTGTGCAGTCC
3' ss Score
10.79
5' ss Seq
ACGGTAACC
5' ss Score
6.62
Exon sequences
Seq C1 exon
CTGCGCCCCCACCCCAGGAGCCCCCGGCAGGGCCCTCGGAGGCAGAACAGCGGCTTCAGGCGGAGACTGAGCGGCTCCAGAAGGAACTAGAGAGCCTGGCTGGGCAGCTGCAGGCACAGGTGAAGGATAACGAAAGTCTGAGTCACCTGAATCAGGAGCAGGAGCAGCGGCTGCTGGAGCTGGAGCGGGAGGCCGAGTGCTGGGGGGAGCAGGCGGAGGAGCGCAAGCAGATTCTGGAGACCATGCAGAGCGACCGCACCACCATCAGCCGTGCGCTGTCCCAGAACCGCGAGCTCAAGGAGCAGCTGGCCGAGCTGCAGAACGGATTCGTCAGGCTG
Seq A exon
TCCAATGAGAACATGGAGGTTACCAGTGCACTACAGTCCGAGCAGCACATCAAGAAGGAGTTGGCCAAGAAGCTGGGCCAGCTGCAGGAGAAGCTGGGGGAGCTGAAGGAGACG
Seq C2 exon
GTGGAGGTGAAGGGCCAGGAGGTTCAAGATCTGCAGCAGCAGCGGGACGAGTACCTGAACCACCTGCAGTATTACGTGGCCGCCTACCAGCTGCACATGGCCGCCTGCCAGCAGCTGGCCTCGGATAAGGAGGCGCTGCACAAGCAGGTGCTGCTGCAGACCCAGCTCATGGACCGGCTGCAGCACGAGGAGGTCCAGGGCAAGGTGGCGATGGAGGCGGCCCGCCAGGAGTTACAGGAGACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011317-'22-23,'22-21,24-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.717 A=0.158 C2=0.280
Domain overlap (PFAM):
C1:
PF150701=GOLGA2L5=FE(18.1=100)
A:
PF150701=GOLGA2L5=FE(6.0=100)
C2:
PF150701=GOLGA2L5=FE(13.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAATCAGGAGCAGGAGCAG
R:
AGGTGGTTCAGGTACTCGTCC
Band lengths:
257-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]