HsaEX6063205 @ hg19
Exon Skipping
Gene
ENSG00000167110 | GOLGA2
Description
golgin A2 [Source:HGNC Symbol;Acc:4425]
Coordinates
chr9:131021446-131023081:-
Coord C1 exon
chr9:131022744-131023081
Coord A exon
chr9:131022355-131022468
Coord C2 exon
chr9:131021446-131021670
Length
114 bp
Sequences
Splice sites
3' ss Seq
GATTGCTTCTCTCTGTCCAGACT
3' ss Score
6.96
5' ss Seq
ACGGTAACC
5' ss Score
6.62
Exon sequences
Seq C1 exon
CTGAACCCCCGCCCCCAGAGCCCCCAGCAGGGCCCTCCGAGGTGGAGCAGCAGCTACAAGCGGAGGCTGAGCACCTGCGGAAGGAGCTGGAGGGTCTGGCAGGACAGCTTCAAGCCCAGGTGCAAGACAATGAGGGCTTGAGTCGCCTGAACCGGGAGCAGGAGGAGAGGCTGCTGGAGCTGGAGCGGGCGGCCGAGCTCTGGGGGGAGCAGGCGGAGGCGCGCAGGCAAATCCTGGAGACCATGCAGAACGACCGCACTACCATCAGCCGCGCACTCTCCCAGAACCGGGAGCTCAAGGAGCAGCTGGCTGAGCTGCAGAGCGGATTTGTAAAGCTG
Seq A exon
ACTAATGAGAACATGGAGATCACCAGCGCACTGCAGTCGGAGCAGCACGTCAAGAGGGAGCTGGGAAAGAAGCTGGGCGAGCTGCAGGAGAAGCTGAGCGAGCTGAAGGAAACG
Seq C2 exon
GTGGAGCTGAAGAGCCAAGAGGCTCAAAGTCTGCAGCAGCAGCGAGACCAGTACCTGGGACACCTGCAGCAGTATGTGGCCGCCTATCAGCAGCTGACCTCTGAGAAGGAGGTGCTGCATAATCAGCTACTGCTGCAGACCCAGCTCGTGGACCAGCTGCAGCAGCAGGAAGCTCAGGGCAAAGCGGTGGCCGAGATGGCCCGCCAAGAGTTGCAGGAAACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167110-'24-26,'24-25,26-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.717 A=0.237 C2=0.360
Domain overlap (PFAM):
C1:
PF150701=GOLGA2L5=FE(18.0=100)
A:
PF150701=GOLGA2L5=FE(5.9=100)
C2:
PF150701=GOLGA2L5=FE(11.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCAAGACAATGAGGGCTT
R:
GCTGCAGACTTTGAGCCTCTT
Band lengths:
257-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)