MmuEX6100518 @ mm10
Exon Skipping
Gene
ENSMUSG00000002546 | Golga2
Description
golgi autoantigen, golgin subfamily a, 2 [Source:MGI Symbol;Acc:MGI:2139395]
Coordinates
chr2:32303584-32304879:+
Coord C1 exon
chr2:32303584-32303921
Coord A exon
chr2:32304142-32304255
Coord C2 exon
chr2:32304634-32304879
Length
114 bp
Sequences
Splice sites
3' ss Seq
GACTGCTGCCTTCTGTCCAGACC
3' ss Score
5.67
5' ss Seq
ACGGTAAGG
5' ss Score
10.38
Exon sequences
Seq C1 exon
AGGAGCCACCGCCTCCAGAGCCTCCAGCTGGGCCCTCCGAGGCGGAAGAGCAGCTGCAGGGAGAGGTCGAGCAGCTGCACAAGGAACTGGAGAGGCTGACGGGACAGCTACGGGCTCAGGTGCAGGACAATGAGAGCCTGAGCCACCTCAACCGGGAGCAGGAGGGGCGTCTGCTGGAGCTGGAGCGGGAGGCCCAGCGCTGGAGCGAGCAGGCCGAGGAGCGCAAGCAGATCCTGGAGAGCATGCAGAGTGACCGCACCACCATCAGCAGAGCACTGTCACAGAACCGAGAGCTGAAGGAGCAGCTGGCCGAGCTGCAGAACGGCTTCGTCAGGCTG
Seq A exon
ACCAATGAGAACATGGAGATCACCAGTGCGCTGCAGTCAGAGCAGCATGTCAAGAAAGAGCTAGCCCGGAAGCTGGGAGAGCTGCAGGAGAGACTGGGAGAGCTGAAGGAGACG
Seq C2 exon
GTGGAGCTCAAGAGCCAAGAAGCACAGGGTCTACAGGAGCAGCGAGACCAGTGCCTGTCCCACCTGCAGCAGTACGCTGCTGCTTACCAACAGCACTTGGCGGCCTATGAGCAGCTGACCTCTGAGAAGGAGGCAATACACAAGCAGCTTCTGCTGCAGACTCAGCTCATGGACCAGCTGCAGCATGAGGAGGTACAGGGCAAGATGGCAGCCGAGCTGGCCCGCCAGGAGCTGCAGGAGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002546-'40-47,'40-40,44-47=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.867 A=0.316 C2=0.305
Domain overlap (PFAM):
C1:
PF150701=GOLGA2L5=FE(18.1=100),PF0396210=Mnd1=PD(69.9=88.5)
A:
PF150701=GOLGA2L5=FE(6.0=100)
C2:
PF150701=GOLGA2L5=FE(13.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAATGAGAGCCTGAGCCAC
R:
GTAGACCCTGTGCTTCTTGGC
Band lengths:
247-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types