GgaEX1001070 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NF84]
Coordinates
chr17:5008324-5010079:+
Coord C1 exon
chr17:5008324-5008670
Coord A exon
chr17:5009448-5009561
Coord C2 exon
chr17:5009855-5010079
Length
114 bp
Sequences
Splice sites
3' ss Seq
AATGGTTTTGATTCTTGCAGACA
3' ss Score
8.02
5' ss Seq
ACGGTAAGC
5' ss Score
9.89
Exon sequences
Seq C1 exon
CAGTGAAATCCATGGATGTTGAGCCATCTTTACCAGCAGGACCTACAGCAGCTGAGCTGAGTCTGCAGGAAGAGATCAAGCGGCTGCAGCACGAAAAGGAGGAACTGCATGGGCAATACCAGGCCCAGGTCCGTGACAACGAGCAGCTGAGCCACCTCAACCAGGAGCAGGAGGAGCGGCTGCTGGAGCTGGAGAAGACAGTACAGCGCTACAATGAGGAGTCTGTGGACAGACAGCAGATCCTGGAGAGCATGCAGAGTGACAAGGCCACAATCAGCAGGGCGCTGAGCCAAAATCGAGAGCTGAAGGAGCAGCTGGCAGAGCTGCAGAATGGGTTTGTCAAACTG
Seq A exon
ACAAATGAAAACATGGAGGTTACAAGTGCCCTACAGTCAGAGCAACACGTAAAGAAGGAGCTGGCTAAGAAGCTTGGGCAGCTGCAGGAGAACCTGGGGGAGCTCAAAGAGACG
Seq C2 exon
CTGGAACTGAAAACACAGGAGGCTCGGGCTCTGCAGGAGCAGCGGGACCAGTACTACGGCCACTTGCAGCAGTATACTGTGGCATACCAGCAACTGGCTGCTGAGAGGGAGGAGCTGCAGAAGCAGTACTTGCTTCAGACACAGCTGATGGACAGGCTGCAGCACGAGGAAGTTCAGGGGAAGGTGACAGTGGAAATGCACCTGAAGGAACTGCAGCAGACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004881_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.776 A=0.289 C2=0.147
Domain overlap (PFAM):
C1:
PF150701=GOLGA2L5=FE(18.5=100)
A:
PF150701=GOLGA2L5=FE(5.9=100)
C2:
PF150701=GOLGA2L5=FE(11.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAAGACAGTACAGCGCT
R:
CAGTTGCTGGTATGCCACAGT
Band lengths:
254-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]