DreEX6008912 @ danRer10
Exon Skipping
Gene
ENSDARG00000063197 | golga2
Description
golgin A2 [Source:ZFIN;Acc:ZDB-GENE-081030-1]
Coordinates
chr5:1389397-1391629:-
Coord C1 exon
chr5:1391411-1391629
Coord A exon
chr5:1390969-1391082
Coord C2 exon
chr5:1389397-1389621
Length
114 bp
Sequences
Splice sites
3' ss Seq
TGACCTCTGACCTTTTCCAGACC
3' ss Score
9.23
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GTGCGGGACAACGAGCAGCTGAGCCGTCTGGTGCAGGAACAGGAAGTGAAGCTGCAGGAGCTAGAGCGACAGGCTGAACGTGCCTCTGAAGACGCTCAGGATCGCCTGCGGATTCTGGAGGACGTTCAGAGCGATAAAGCCACCATCAGCAGAGCGCTGACCCAGAACCGAGAGCTCAAAGACCAGCTGGCCGAGCTGCAGAACGGCTTCGTCAAACTG
Seq A exon
ACCAATGAGAACATGGAGCTGACCAGCGCTCTGCAGTCCGAGCAGCACGTGAAGAAGGAGATCGCCCGCAAGATGGGTCAGCTGCAGGAGGATCTGCACAACGCCAAAGAGCAG
Seq C2 exon
CTGCTGGAGAGCTCGTCTGAACTGACGTCAGTGCAGGAGCAGCGGGATCAGTATCTGGCTCATCTGCAGCAGTACAGCGCTGGATATCAGCAGCTGCTGGCGGAGCGAGAGCATCTGCAGAAGCAGTTCCTGCAGCAGACGCAGCTGATGGACCGGCTGCAGCACGACGAGGTGCAGGGCAAAGTGCAGCTGGAGCAGAGCCACATGCAGCTGCAGGAGGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063197-'26-26,'26-25,27-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.384 A=0.763 C2=0.373
Domain overlap (PFAM):
C1:
PF150701=GOLGA2L5=FE(10.9=100)
A:
PF150701=GOLGA2L5=FE(5.6=100)
C2:
PF150701=GOLGA2L5=FE(11.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAAGTGAAGCTGCAGGAG
R:
GTACTGCTGCAGATGAGCCAG
Band lengths:
255-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]