MmuEX6100518 @ mm9
Exon Skipping
Gene
ENSMUSG00000002546 | Golga2
Description
golgi autoantigen, golgin subfamily a, 2 [Source:MGI Symbol;Acc:MGI:2139395]
Coordinates
chr2:32159104-32160399:+
Coord C1 exon
chr2:32159104-32159441
Coord A exon
chr2:32159662-32159775
Coord C2 exon
chr2:32160154-32160399
Length
114 bp
Sequences
Splice sites
3' ss Seq
GACTGCTGCCTTCTGTCCAGACC
3' ss Score
5.67
5' ss Seq
ACGGTAAGG
5' ss Score
10.38
Exon sequences
Seq C1 exon
AGGAGCCACCGCCTCCAGAGCCTCCAGCTGGGCCCTCCGAGGCGGAAGAGCAGCTGCAGGGAGAGGTCGAGCAGCTGCACAAGGAACTGGAGAGGCTGACGGGACAGCTACGGGCTCAGGTGCAGGACAATGAGAGCCTGAGCCACCTCAACCGGGAGCAGGAGGGGCGTCTGCTGGAGCTGGAGCGGGAGGCCCAGCGCTGGAGCGAGCAGGCCGAGGAGCGCAAGCAGATCCTGGAGAGCATGCAGAGTGACCGCACCACCATCAGCAGAGCACTGTCACAGAACCGAGAGCTGAAGGAGCAGCTGGCCGAGCTGCAGAACGGCTTCGTCAGGCTG
Seq A exon
ACCAATGAGAACATGGAGATCACCAGTGCGCTGCAGTCAGAGCAGCATGTCAAGAAAGAGCTAGCCCGGAAGCTGGGAGAGCTGCAGGAGAGACTGGGAGAGCTGAAGGAGACG
Seq C2 exon
GTGGAGCTCAAGAGCCAAGAAGCACAGGGTCTACAGGAGCAGCGAGACCAGTGCCTGTCCCACCTGCAGCAGTACGCTGCTGCTTACCAACAGCACTTGGCGGCCTATGAGCAGCTGACCTCTGAGAAGGAGGCAATACACAAGCAGCTTCTGCTGCAGACTCAGCTCATGGACCAGCTGCAGCATGAGGAGGTACAGGGCAAGATGGCAGCCGAGCTGGCCCGCCAGGAGCTGCAGGAGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002546-'26-29,'26-28,27-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.867 A=0.316 C2=0.305
Domain overlap (PFAM):
C1:
PF150701=GOLGA2L5=FE(18.1=100),PF0396210=Mnd1=PD(69.9=88.5)
A:
PF150701=GOLGA2L5=FE(6.0=100)
C2:
PF150701=GOLGA2L5=FE(13.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAATGAGAGCCTGAGCCAC
R:
GTAGACCCTGTGCTTCTTGGC
Band lengths:
247-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: