RnoEX6016430 @ rn6
Exon Skipping
Gene
ENSRNOG00000011884 | Golga2
Description
golgin A2 [Source:RGD Symbol;Acc:620282]
Coordinates
chr3:11333092-11334481:+
Coord C1 exon
chr3:11333092-11333429
Coord A exon
chr3:11333673-11333786
Coord C2 exon
chr3:11334236-11334481
Length
114 bp
Sequences
Splice sites
3' ss Seq
GACTGTTGCTTTCTGTCCAGACA
3' ss Score
5.81
5' ss Seq
ACGGTAAGG
5' ss Score
10.38
Exon sequences
Seq C1 exon
AGGAGCCACCACCTCCAGAGCCTCCAACTGGGCCTTCAGAGGCCGAAGAGCGGCTGCAGGGAGAGGTTGAGCAGCTGCAGAAGGAACTGGAGGGTCTGACGGGTCAGCTGCGGGCCCAGGTGCAGGACAATGAGAGCCTGAGCCACCTGAACCGGGAGCAGGAGGGACGGCTGCTGGAGCTGGAGCGCGAGGCCCAGCACTGGAGCGAGCAGGCAGAGGAGCGCAAGCAGATCCTGGAGAGCATGCAGAGTGACCGCACCACCATCAGCAGAGCGCTGTCACAGAATCGCGAGCTCAAGGAGCAGCTGGCTGAGCTGCAGAACGGCTTCGTCAGGCTG
Seq A exon
ACAAATGAGAACATGGAGATTACCAGTGCGTTACAATCAGAGCAGCATGTCAAGAAAGAGCTGGCCAGGAAGCTGGGAGAGCTTCAGGAGAGGCTGGGAGAGCTGAAGGAGACG
Seq C2 exon
GTGGAGCTGAAGAGCCAAGAAGCACAGGGTCTGCAGGAGCAGCGAGACCAGTGCCTGTCCCACCTGCAGCAGTACGCTGCCGCCTACCAACAGCACTTGACAGCCTATGAGCAGCTGACCTCTGAGAAGGAGGCACTGCACAAGCAGCTTCTGCTGCAGACACAGCTCATGGACCAGTTGCAGCATGAGGAAGTTCAGGGCAAGATGGCAGCCGAGATGGCCCGCCAGGAGCTGCAGGAGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011884-'27-33,'27-30,29-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.885 A=0.395 C2=0.433
Domain overlap (PFAM):
C1:
PF150701=GOLGA2L5=FE(18.1=100)
A:
PF150701=GOLGA2L5=FE(6.0=100)
C2:
PF150701=GOLGA2L5=FE(13.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACAGAATCGCGAGCTCAA
R:
ATGCTGCAACTGGTCCATGAG
Band lengths:
247-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]