BtaEX6046407 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000038139 | CERCAM
Description
Bos taurus cerebral endothelial cell adhesion molecule (CERCAM), mRNA. [Source:RefSeq mRNA;Acc:NM_001102035]
Coordinates
chr11:99027940-99029086:+
Coord C1 exon
chr11:99027940-99028067
Coord A exon
chr11:99028251-99028454
Coord C2 exon
chr11:99028834-99029086
Length
204 bp
Sequences
Splice sites
3' ss Seq
ACCCCTGGTGTCACCTGCAGCTA
3' ss Score
9.8
5' ss Seq
CAAGTGAGC
5' ss Score
6.39
Exon sequences
Seq C1 exon
GTCGTCACCCGGGGCCTGGCCCAGGTCGTGGTATTTGAGGACGATGTACGCTTTGAGAGCAATTTCAAGGGGCGGCTGGAGCAGCTGATGGAGGAGGTGGAGGCGGAGAAACTTCCTTGGGACTTGAT
Seq A exon
CTACCTCGGCCGGAAGCAGGTGAACCCCGAGGAGGAGGCAGTTGTGGAGGGGCTGCCGCACCTGGTGGCGGCCGGCTACTCCTACTGGACACTGGCATACGTCCTGAGCCTGGCGGGTGCCCGCAAGCTGCTGGCCTCCCAGCCGCTGCGCCGAATGCTGCCTGTGGATGAGTTCCTGCCCATCATGTTTGACCAGCACCCCAA
Seq C2 exon
TGAGCAGTACAAGGCACACTTCTGGCCACGGGACCTGCAGGCCTTCTCAGCCCGGCCCCTGCTCGCAGCCCCCACCCACTATGCGGGGGACTCCGAGTGGCTCAGCGACACCGAGACATCCTCGCCCTGGGACGATGACAGTGGCCGCCTCATCAGCTGGACTGGCTCCTACAAGACCCTGCGTGGCCCCCGCCTGGACCTGGCAGGCGGCAGCGGGCACAGCCTCCGTCCGCACCCCCGGGATGAGCTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038139-'13-15,'13-14,14-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.250
Domain overlap (PFAM):
C1:
PF0175512=Glyco_transf_25=FE(22.7=100)
A:
PF0175512=Glyco_transf_25=PD(31.9=85.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAGGTCGTGGTATTTGAG
R:
CCACGCAGGGTCTTGTAGGAG
Band lengths:
296-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]