DreEX6087252 @ danRer10
Exon Skipping
Gene
ENSDARG00000079049 | cercam
Description
cerebral endothelial cell adhesion molecule [Source:ZFIN;Acc:ZDB-GENE-030131-9787]
Coordinates
chr10:10408552-10421893:+
Coord C1 exon
chr10:10408552-10408679
Coord A exon
chr10:10413563-10413766
Coord C2 exon
chr10:10421659-10421893
Length
204 bp
Sequences
Splice sites
3' ss Seq
TGTTCTGGGATCTATTGCAGATA
3' ss Score
8.55
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
ATGGTAGACATGCAGCTTGACAAGGCGCTGATCTTTGAGGACGATGTACGTTTTCAAGCCAATTTTAAACGGCGCATGATGCGGCTGATGGAGGAGGTGGAGCAGGTGGAGCTGGACTGGGACATCAT
Seq A exon
ATACCTGGGCAGAAAGAAGGTGAACCCTGGAGAGGAAGTTCCAGTGGAGAACGTGAGGAATCTGGTGTTCGCCGATTACTCCTACTGGACGCTGTCTTACGCCATCTCTCTCCAGGGAGCTCAGAAGCTCCTCAACGCTGAACCCGTATCCAAGATGCTCCCTGTGGATGAGTTCCTGCCCATCATGTATGACAAGCACCCAAA
Seq C2 exon
TGAGGACTACAAATCCCATTTTCCCAACCGAAATCTGATGGCGTACTCCACACACCCTCTGCTGGTGCAGCCATGTCATTACGCCGGAGACGCGGAGTGGGTGAGCGACACAGAGACCTCCACATTGTGGGATGATGACAGCGTTCGCACTGACTGGAGAGGCTCACATAAGACTCTGAAGGGCTCACAGCCACCCCCCGGCCTGCAGAGCGCCACCTACAAGGATGAGCTGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079049-'13-13,'13-12,15-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.321
Domain overlap (PFAM):
C1:
PF0175512=Glyco_transf_25=FE(22.7=100)
A:
PF0175512=Glyco_transf_25=PD(31.9=85.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGGCGCTGATCTTTGAGG
R:
GCTGTGAGCCCTTCAGAGTCT
Band lengths:
300-504
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]