GgaEX1014905 @ galGal4
Exon Skipping
Gene
ENSGALG00000004986 | CERCAM
Description
cerebral endothelial cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:23723]
Coordinates
chr17:4933496-4935327:-
Coord C1 exon
chr17:4935200-4935327
Coord A exon
chr17:4934932-4935135
Coord C2 exon
chr17:4933496-4934448
Length
204 bp
Sequences
Splice sites
3' ss Seq
TCTGACCGCTCACCCTGCAGCTA
3' ss Score
9.13
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
Exon sequences
Seq C1 exon
ATCGTGTCCCAGGGGCTGGAGCGGGTGCTGGTCTTTGAGGACGATGTACGCTTCGAGGTGTCCTTCCCAGCACGGCTGCAGCGGCTGATGGAGGAACTGGAGGAGGCACGGCACGACTGGGACCTCAT
Seq A exon
CTACCTGGGGAGGAAGCAGGTGAATGCAGAGGATGAAGCTCCTGTGGAGGGTGTCCAGAACCTGGTGGTAGCCGGGTATTCCTACTGGACGCTGGCGTACGCCATCTCCCTCCGTGGCGCCCAGAAGCTGCTGGCTGCCAAGCCCCTCTCCAAAATGCTGCCTGTGGATGAGTTCCTGCCCATCATGTACGACAAGCACCCCAA
Seq C2 exon
CGAGGACTACAAGAGGCACTTTGCCCCACGGGACCTGCAGGTGTTTTCGGCTCACCCACTCCTGGTTTATCCCACCCACTACGCCGGGGACAGCAACTGGCTGAGCGACACAGAGACCTCCACCATCTGGGATGATGACTCCAAACAGACAGGCTGGGTGGGCTCGCAGAAGACCCTGAGGGACCCGCGGGATGGTGGGGGGTACCTCCGCTCTGCATCCCACGATGAGTTCTGAGGGTGCTGGTGCTGGACATGGACCCCCCCTGGGAGCAGCCAGACCCTCCTCACCCACCCATGGGAAGGCGTCGGTGAGCAGAGGGCTTGCTCCTGCCTGGACCGTTAGCAGGGATGCTCACTGCTTTTCTCCATAGGGACCAGGCATCGTGACCCAGGGGGAGCATCGTTAATCGGGTTCCCCTCCTGGGGTGCTCCAAAGTGGGATTTGTCCCTGGGGCTCTTGGCAAGACGGTGCCCAGCCAGACAGAGGGGCTGCCAGACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004986-'19-20,'19-17,21-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.179
Domain overlap (PFAM):
C1:
PF0175512=Glyco_transf_25=FE(22.7=100)
A:
PF0175512=Glyco_transf_25=PD(31.9=85.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCTGATGGAGGAACTGGAG
R:
ACCAGCACCCTCAGAACTCAT
Band lengths:
292-496
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]