MmuEX0011045 @ mm9
Exon Skipping
Gene
ENSMUSG00000039787 | Cercam
Description
cerebral endothelial cell adhesion molecule [Source:MGI Symbol;Acc:MGI:2139134]
Coordinates
chr2:29736133-29738360:+
Coord C1 exon
chr2:29736133-29736260
Coord A exon
chr2:29736435-29736638
Coord C2 exon
chr2:29737216-29738360
Length
204 bp
Sequences
Splice sites
3' ss Seq
ACTTTTGCTGTCATTTGCAGCTA
3' ss Score
10.89
5' ss Seq
AAAGTGAGA
5' ss Score
4.23
Exon sequences
Seq C1 exon
GTGGTTGCCAGGGGCCTGGCCCGGGTCGTGGTGTTTGAGGATGACGTACGCTTCAAGGACAACTTCCGGAGGCGGCTAGAACGGCTGATGGAGGACGTGCTGATTCAGAAGCTGTCATGGGACTTGAT
Seq A exon
CTACCTTGGCCGGAAGCAGGTGAACCCTGAGGAGGAAGTGGCTGTGGAGGGGCTGCCTGGTCTCGTGGTGGCCGGGTATTCCTACTGGACACTTGCGTACACCTTGAGCCTGGCAGGCGCTCGCAAACTGTTAGCATCCCAGCCCCTGCATCGCATGCTACCTGTGGATGAATTCCTGCCTGTCATGTTTGATCGCCACCCAAA
Seq C2 exon
TGACCAGTACAAAGCATACTTCTGGCCTCGGGACCTCCAAGCCTTCTCAGCTAGGCCTCTGCTTGCCTCCCCCACCCACTATTCGGGAGACGCCGAGTGGCTCAGTGACACAGAGACATCCTCCCCCTGGGACGATGACAGTGGTCGCCTCATTAGCCAGACTGGCTCTCAAAAGGCCCTTCGTGGCCCCCACCTGCACCTGACTGGCAGCAGTGGACACAGCCTCCATCCTCACCACAGGGATGAACTGTAGGTGAAGCTGGACCTAGAAGAGGACCAGTCCACGGCCCGGGCTTCCCTTCTCAGCTCTCTCCTCCTCCCTCCTCCTGCTTCTCTCCCATCCCCAACCCACCTCTTGTCTACTTCTCTCTGATTTCTCTAGCTTTGTCTCTGTCTTGTCTCTGTATCTGCCTCTCTACCTGTCTGTCTCTCTCCATAGCTGTTGACATCTCTACATCTGATTTTCCTTTTCTTTCTCTTGCCCCCTTGACCGCTAGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039787-'17-18,'17-17,20-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.464
Domain overlap (PFAM):
C1:
PF0175512=Glyco_transf_25=FE(22.7=100)
A:
PF0175512=Glyco_transf_25=PD(31.9=85.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTCGTGGTGTTTGAGGATG
R:
CCACGAAGGGCCTTTTGAGAG
Band lengths:
292-496
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: